PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00038g01824.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 557aa    MW: 61764.4 Da    PI: 6.2226
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00038g01824.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-09441489348
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                               +WT  E  +lv++v+++G g+W+ I r+       Rt  ++k++w+++l
  Peaxi162Scf00038g01824.1 441 PWTINEVVKLVEGVARYGAGRWSEIKRHAFascPYRTSVDLKDKWRNLL 489
                               8****************************99**9*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.395434493IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-14436491IPR009057Homeodomain-like
SMARTSM007179.1E-8438491IPR001005SANT/Myb domain
SuperFamilySSF466892.62E-16440495IPR009057Homeodomain-like
CDDcd116605.08E-19440490No hitNo description
PfamPF002495.6E-7441489IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MAVEGFLEDD KCEPKLVPDT RQTSESFKTE GCLLESNPFQ APEGKIKYED PEVGAEKSNV  60
SGGPVKYFQV TVHELVPCSE PSNIEVSVRT EVCSNSQDAL IEDKPSTSAA GSSLKPDFSK  120
LEGKICLDNL TVRELHETFK ATFGRETSVK DKQWLKRRIT MGLTNSCDFS CTTFIIRNNL  180
VVKKGEEQIC HRLKGSVSAS EVGMANSDSG GSLGDHESRS NDDANFSGTD VPSSAIESCD  240
VTKDLSTEQR PAKRLRKPTK RYIEELSEIE SGESSEKLAS SDKPSRYRSP CPETLMKPTE  300
NVKSIVRPLV TRQDSLGGSG VEIPFVSRIR RSRPRENFMT LLKLQPCGMD MATRQVRSVF  360
DVAEPEDEKI NNDLIKTSSS PGWTPQPLDA TCEKDEHYSG MNVVEIENDT EVNDCSEDNS  420
EDNVVTLPTP KGGMRRKHHR PWTINEVVKL VEGVARYGAG RWSEIKRHAF ASCPYRTSVD  480
LKDKWRNLLK ATFVQLPAEQ GMLNSRKQAS IPIPAPILSR VRELADMQGQ VPPIFSSGKS  540
IGHSSSRSIH EARSGYL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016459221.10.0PREDICTED: uncharacterized protein LOC107782799 isoform X2
TrEMBLA0A0V0IRH00.0A0A0V0IRH0_SOLCH; Putative ovule protein
TrEMBLM0ZR630.0M0ZR63_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000063420.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118812023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.24e-92TRF-like 6